We have lots of local customizations (and how we keep track of them)
In a comment on my entry on forgetting some of our local changes to our Ubuntu installs, pk left an interesting and useful comment on how they manage changes so that the changes are readily visible in one place. This is a very good idea and we do something similar to it, but a general limitation of all such approaches is that it's still hard to remember all of your changes off the top of your head once you've made enough of them. Once you're changing enough things, you generally can't put them all in one directory that you can simply 'ls' to be reminded of everything you change; at best, you're looking at a list of directories where you change things.
Our system for customizing Ubuntu stores the master version of customizations in our central administrative filesystem, although split across several places for convenience. We broadly have one directory hierarchy for Ubuntu release specific files (or at least ones that are potentially version specific; in practice a lot are the same between different Ubuntu releases), a second hierarchy (or two) for files that are generic across Ubuntu versions (or should be), and then a per-machine hierarchy for things specific to a single machine. Each hierarchy mirrors the final filesystem location, so that our systemd unit files will be in, for example, <hierarchy root>/etc/systemd/system.
Our current setup embeds the knowledge of what files will or won't be installed on any particular class of machines into the Ubuntu release specific 'postinstall' script that we run to customize machines, in the form of a whole bunch of shell commands to copy each of the files (or collections of files). This gives us straightforward handling of files that aren't always installed (or that vary between types of machines), at the cost of making it a little unclear if a particular file in the master hierarchy will actually be installed. We could try to do something more clever, but it would be less obvious that tne current straightforward approach where the postinstall script has a lot of 'cp -a <src>/etc/<file> /etc/<file>' and it's easy to see what you need to do to add one or specially handle one.
(The obvious alternate approach would be to have a master file that listed all of the files to be installed on each type of machine. However, one advantage of the current approach is that it's easy to have various commentary about the files being installed and why, and it's also easy to run commands, install packages, and so on in between installing various files. We don't install them all at once.)
Based on some brute force approximation, it appears that we install around 100 customization files on a typical Ubuntu machine (we install more on some types of machines than on other types, depending on whether the machine will have all of our NFS mounts and whether or not it's a machine regular people will log in to). Specific machines can be significantly customized beyond this; for example, our ZFS fileservers get an additional scripted customization pass.
PS: The reason we have this stuff scripted and stored in a central filesystem is that we have over a hundred servers and a lot of them are basically identical to each other (most obviously, our SLURM nodes). In aggregate, we install and reinstall a fair number of machines and almost all of them have this common core.
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